rs50828215 SNP Detail

Summary

• ID
  rs50828215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCAAGCA CAAGAGTCCA
  TAGCCCCCAG CCCGAAGCTA CAGTCTGGAG ATCTTGGTGT AATGTGAAGG TCCCAGGCTT
  CCCCGGGCTC CCCACCTCAG TGATGTTCTT GGTGACTTTT GCTTCCACGT CATATCTCTC
  TTCATCCACT TTGTCCACCC GAGCGTGAAG CTGTCGGCAT AAGTCCTGGT GAAGGAACGC
  R
  TGGATGCTGA GAGGGAGGCT GGAGATTGGG TTCCCTGGTC TGAGAGAGGA GACCTCTGGG
  TCTGAGGAAG GAGGCCTAGG CTCTGGACCC CCGAGTTTGA GAGAGGAGTG CTGGGGTCTG
  GACTCCTGAG TCTGAGGAAG GAGGGGGTGA AAGGAAGCTG ACACCGGAAT CTGCACTCCA
  GGGAACTTAA AGAAATATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964948	NES16164645	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50828215					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964948	NES16164645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	984 bp proximal
Rr641974	regulatory region 641974	1677 bp distal
Rr641975	regulatory region 641975	886 bp proximal
Rr641976	regulatory region 641976	1975 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1132 bp downstream
Tssr64335	transcription start site region 64335	61 bp downstream
Tssr64336	transcription start site region 64336	1127 bp upstream
Tssr64337	transcription start site region 64337	1270 bp upstream
Tssr70484	transcription start site region 70484	1333 bp downstream
Tssr70485	transcription start site region 70485	1884 bp downstream