rs50828269 SNP Detail

Summary

• ID
  rs50828269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10992584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAATT ACTAAGCATG
  TCTGTGAGGG CAGTTCAACA GAAATTATCG AAGGAAGAAA GATCAACCCA GAATATGGGC
  ATCATCATAC CATGTGACAC ACACAAAAGA GAGACAGACC AACAAGGTTT CAGCATTCAT
  GGCTCTGTTC CGGGCTGATG ACTCAATATA ACCAACTGCT TGCCAATCAG GCGATTACCA
  Y
  CAGAGCCTTT CTTACTGCCA ACAATGTATT CTCCACACTG ATGAACTGTT GCATCAAAAT
  GTGGGCCAAA ACCTTCCTAC CTTGAGTTGC TTTGCTGGGT ATTTGGTTAG GTCAACGGAG
  ATAGTAATTA ATATAAACAC AAAGATTGTA CGATAGTCTA TGTCCTTCTG TATTTCTTTG
  TGTCACCAGT TTCAATGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324260897	CHEV_13_10941794	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50828269					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10992584 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	within coordinates
Rr278201	regulatory region 278201	117 bp distal