rs50829661 SNP Detail

Summary

• ID
  rs50829661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115980403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGACAGT TAGGAAAGCA
  CATGTTTTCT CTGTTTTGTC CAGTGTAGTT ACCACACTAC CATGGGGATA GGAGGCAGGG
  GGTGACCTTA TTTATGATAA TGAAAGAAGG GGTCACAGGG AGGTGAGCTG AGAAATCTAG
  ATATGTTTAC AACAAGGGCA TCTGGAACCC CCACCTTCAC ATGCAGGCTT CACTAAAAAA
  Y
  GCCAGGATCT TTTTGGTGCG TCCTATGAAG AGATTGCTGA AGGAAAGGTG TCCCTACGAG
  ATGCCCCTGG CCTAGTTCCT ACCTGGGAAT GGCAGGTCTG CTGCTTTCCC TCCGTGAACC
  AAGAACCTTG GATTCTAATC GTAGTAGCTC TCACACGAAT CTTGGACCCT GGTTAGAAAT
  TATTTATGAC TTCATTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318508	NES16924952	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50829661					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318508	NES16924952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115980403 () rs orientation: forward

Symbol	Name	Function Class
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Tssr95844	transcription start site region 95844	596 bp downstream
Tssr95845	transcription start site region 95845	576 bp downstream
Tssr95846	transcription start site region 95846	546 bp downstream