rs50830139 SNP Detail

Summary

• ID
  rs50830139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86233386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCAAGAG GAGCGAACCC ACTATCAGCA GCTGCTGGCC
  TACGAGGACC GTCTCTATGC TGACATCCTA CAGTGGGATT TCCTTGACAG CTTCTTCAAC
  Y
  TGACCCTCAA GGAGATCCAC TTCCTCAAGT GGCTCGACAT TTACTGTCCC AACGTCCCCT
  TCGTTTTCAA AGGTGATGAT GATGTCTTTG TCAACCCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144875340	ENSMUSSNP7102405	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50830139					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86233386 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Cpgi501	CpG island 501	1486 bp distal
Gm28626	predicted gene 28626	1604 bp upstream
Rr366828	regulatory region 366828	212 bp upstream
Rr414518	regulatory region 414518	1517 bp distal
Rr414519	regulatory region 414519	1290 bp distal
Tssr7739	transcription start site region 7739	1113 bp upstream