rs50830452 SNP Detail

Summary

• ID
  rs50830452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109562387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCCCA TAAATTTTGT
  GGAGCAACTG GCCTGGAGCG TCCTCTGTGG CGAGCTAGCA CCTGGCAGGG CACACTTCTG
  GCCCGCTTTG CCCTGGCCAG GTTCCCTTCC CATTTGTAGT CACCCAAAAG TCATAAAGGT
  CACATCTCAA TGCCACTCAA AGCGGCTGCT GGCAGGCTTG GTGGTCTAGA GCCAGCCCAG
  K
  GAGCTTGGTT GGAGGCGGGA ATCTGCAGGG AGATGCCTGC TATTTCACAA ACTGGGGAAA
  GAGGAGAAAT TGGGCACTTG GCCACTATCC TGCCAGTTGG GTCAACAGCC AAAAATAGCT
  CTTATTTCCT CCTCTAGGCT CCAAGCCGAA ATAAGTGAGA GAGAGCCATG GCTTTTGGTT
  TTAATTTTGC TCCCCATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717602	NES17648119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50830452					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717602	NES17648119	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109562387 () rs orientation: forward

Symbol	Name	Function Class
1110006E14Rik	RIKEN cDNA 1110006E14 gene	within coordinates
Mir136	microRNA 136	565 bp downstream
Mir432	microRNA 432	923 bp downstream
Mir434	microRNA 434	1354 bp downstream
Mir3071	microRNA 3071	556 bp upstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rr472784	regulatory region 472784	within coordinates
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115135	transcription start site region 115135	562 bp downstream
Tssr115136	transcription start site region 115136	1533 bp upstream
Tssr117754	transcription start site region 117754	1140 bp downstream