rs50830459 SNP Detail

Summary

• ID
  rs50830459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108886322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA CTATTCAGGC TCCACTGGGG
  R
  AATTTTCCTA CCTTTGCTGG CTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451643	NES16833309	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50830459					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451643	NES16833309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108886322 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	679 bp downstream
Rr686955	regulatory region 686955	1632 bp distal
Rr686956	regulatory region 686956	332 bp proximal
Rr686957	regulatory region 686957	1987 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	678 bp downstream
Tssr87212	transcription start site region 87212	1621 bp downstream
Tssr87213	transcription start site region 87213	1263 bp downstream
Tssr87214	transcription start site region 87214	1191 bp downstream
Tssr87215	transcription start site region 87215	960 bp downstream
Tssr87216	transcription start site region 87216	907 bp downstream
Tssr87217	transcription start site region 87217	834 bp downstream
Tssr87218	transcription start site region 87218	534 bp downstream
Tssr87219	transcription start site region 87219	301 bp downstream
Tssr87220	transcription start site region 87220	213 bp downstream
Tssr87221	transcription start site region 87221	within coordinates
Tssr87222	transcription start site region 87222	41 bp upstream
Tssr91571	transcription start site region 91571	461 bp downstream
Tssr91572	transcription start site region 91572	982 bp downstream
Tssr91573	transcription start site region 91573	1139 bp downstream
Tssr91574	transcription start site region 91574	1369 bp downstream
Tssr91575	transcription start site region 91575	1420 bp downstream
Tssr91576	transcription start site region 91576	1505 bp downstream
Tssr91577	transcription start site region 91577	1962 bp downstream