rs50830539 SNP Detail

Summary

• ID
  rs50830539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:24010954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATCCAG GACTCAGAGT
  GACTTCAATG ACCCCAGCCA AGGTCAATTT TAATCAGAGC CTTAGTCAGC CTCCTTTTCT
  GGGGGTGAGG AAGGGGGGGT GGATCATAGT CTCCTGGCTC AGGTGGCTCA CAGTATGGGA
  GTGTTGGATA AGGCCTCAAG TGAGGGCAGA TGCCATCAGG GAAAGAGAAG ACAAAAGACA
  Y
  GCAGAGGTCA TACAACAGCA GCAAGCTGCT GCACACAGGT CTACAGTCCA TTTCCCCCTA
  CTTGTGATGG TTTGAATAGG AATGGCCCCA TCAACTCATG TATTTGAATG CTTGAGCCAT
  GGGGAGGGGC ACTATTAGTA GGTGTGGCCT TGTTGGAGGA AGTGTGTCAC TGTGGGGATA
  GAACTTTGAG TACTAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62131908	NES17176673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50830539					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62131908	NES17176673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:24010954 () rs orientation: forward

Symbol	Name	Function Class
Kcnma1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	Intron
Rr488838	regulatory region 488838	1275 bp distal
Tssr127724	transcription start site region 127724	1333 bp downstream