rs50831128 SNP Detail

Summary

• ID
  rs50831128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115474006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGACTGCT GCTTGTATGT
  GAGGCTCCGA ATTAAATCCC TAACACAGAA GGGAGAGAAA AAAAAAAACC CAACAAAAAC
  TGCAGTTGCA CCACGCAAAG GTGGCTACTG GTCTTTCTGG GACTTAGGGT TCTGTTGGAG
  GATCCCTAAG AGCATAGATC TTAAATCAGC TGACTTCAAG CCCTAATACA ACAAGGTACT
  Y
  ATCACCTCTG TATTTTAAGT TTTCTTTATA AACATCAAAT GTACTTTAAG TTTTTATTAT
  TTATGTATGT GTATGTCTCT GTGGGTATGT GCACATGAGT ACAGGTGCTC GTGGAAGCCA
  AAGGCATCAG ATCCTCTGGA GTCAGAGTGA GAGGCAGTTG TGACCTGCCT GGCTGGTTTG
  GGTGCTGGGT GCTCTGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60829318	NES16021027	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50831128					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829318	NES16021027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115474006 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Rr618223	regulatory region 618223	1748 bp distal
Tssr52783	transcription start site region 52783	1883 bp upstream
Tssr52784	transcription start site region 52784	1852 bp upstream
Tssr52785	transcription start site region 52785	1778 bp upstream
Tssr52786	transcription start site region 52786	1707 bp upstream
Tssr52787	transcription start site region 52787	1667 bp upstream
Tssr52788	transcription start site region 52788	1449 bp upstream
Tssr52789	transcription start site region 52789	1416 bp upstream