rs50831557 SNP Detail

Summary

• ID
  rs50831557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20988304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATGCAG GTCTGTAGAC
  ATAAACTAAA CAGCAGCAGG TTTATGACTA TGGTCATCCT ACCCAGAACA TACTTTATCT
  TGTCAGAAAG GAGAGGTTTG TTTGTTTGTT TGTTTGTTTA TTTGAGACAG GATTTCTCTA
  TGTAGTCCTG CTGGCCCAGG AACTCAATCT ATAGACCAGA CTGGCCTCCA ACTCACCACC
  Y
  ACCTGGCTCA GAAAGGACAG GTTGTTTTGT TTTGTTTTGT TTTTTTAATA TGCTAAAACT
  TGTTTAAATT TTCATATCTA GAAATCTCTA TAGCCTATAT AGTCCCCACT GTCTTAGTTT
  TGGTTTTGAG ACAGGATCTC ACTGAAGTGC ACAGACTGCC CTCGAGACGA CACGAGTGTA
  GCCAGCTTTG AGCTTCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148726395	ENSMUSSNP6926398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50831557					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20988304 () rs orientation: forward

Symbol	Name	Function Class
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Rr407023	regulatory region 407023	1878 bp proximal
Tssr6058	transcription start site region 6058	226 bp downstream
Tssr6059	transcription start site region 6059	221 bp downstream