rs50832757 SNP Detail

Summary

• ID
  rs50832757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3400361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAGGGC ACAAGCTCAG
  AAGATGATGT CACCATGAGG CCCAGGGGCA TGGGTGCACC GTGGTCTCCA GCCAGGCTGG
  AGCTCAAGTT TCCTGACTGC AGCCTGGGGC CAGTTCTCCC ACTGTTCCCT CCCTGAAGTC
  ACCAGCTGTC CTTCTTCTCG AGAGATTCAA AACCTTGTGA GGTAAGACAG GATCTCCTGA
  R
  GGGATTAATG TCCCATAGCT GTCAGCATGG CCTTTGCGCT GGTATGGCTC TCAGCGAGCA
  CCTGGGCCTT TGCCAGTGAG GCAGACTTGG ATTTTTAAAG TTAACTCAGT GGCTCATGGG
  AGGTTGCCCA GACTTTTCTG TGACTCCTTG GGACAGGAGC CAGCCGACAG TTGGCCTTTA
  GTGTGCATTT TGCAGCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52276702	NES15357836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50832757					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52276702	NES15357836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3400361 () rs orientation: forward

Symbol	Name	Function Class
Gm26520	predicted gene, 26520	within coordinates
Rr269408	regulatory region 269408	378 bp distal
Rr269409	regulatory region 269409	258 bp distal
Tssr112480	transcription start site region 112480	165 bp downstream
Tssr112481	transcription start site region 112481	84 bp downstream