rs50833300 SNP Detail

Summary

• ID
  rs50833300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:132291488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCTCT ACAAACAAGG
  CAAACACAAT CCACTATTGT TTTTTCATAA CACCATAAAA AATAAGTTTC CCTCTGTAAA
  GTACAACATA CTTTCTTGCA TCTTCTACCA CAAAAAAGGT CTTTTTATAA ATTTACTCAT
  ATTATTTTGT TGCAAGAATA TTTGTAATTC ATACCATAAG TATAGTTTAA GCTCTAGAAG
  Y
  AAATTAATAA CAAATGTTCT TCTATTTGTT CTCATAATTC TTTGCCTCTG TCGGTTTTCT
  ATCTCCTTTC ATTTCTCCCA GTCCTGAAGT GTGTTACACC AGTCAAATAT CACTGTACCA
  CTCTCTCCCC TACTTCATAC CTTCATCTTG TCTCTGAGCT GAGCTCAGGA CCAGCAAAGC
  TGCTGTGAGC AGGACAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133730235	ENSMUSSNP4340200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50833300					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:132291488 () rs orientation: forward

Symbol	Name	Function Class
Prb1b	proline-rich protein BstNI subfamily 1B	within coordinates
Tssr2031	transcription start site region 2031	226 bp downstream