rs50834520 SNP Detail

Summary

• ID
  rs50834520
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34844176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAAACTGTAT TTTGAAAATC CATTCTTAAT TATCTTTTAC
  AGTAGGAAAT ACGTTGGCAG GGATCAAAAC TTAAAATATA CACAAAATGC ATATATACGG
  T
  GAAACCCTGT TTCAAATCAC TTTACTTGAA TCAGCTAATT TTGTATGTTC CTCAGATGCT
  GGTATTAGCA CAGGCCAATA ATACACACTT GCACAAACGT T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147971630	ENSMUSSNP5452792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50834520					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34844176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	502 bp distal
Gm21691	predicted gene, 21691	1470 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr404796	regulatory region 404796	1369 bp downstream
Rr515294	regulatory region 515294	1561 bp distal
Rr515295	regulatory region 515295	1368 bp distal
Rr515296	regulatory region 515296	485 bp distal
Rr515297	regulatory region 515297	671 bp proximal
Tssr138201	transcription start site region 138201	1366 bp downstream
Tssr138202	transcription start site region 138202	1327 bp downstream
Tssr138203	transcription start site region 138203	345 bp downstream
Tssr138204	transcription start site region 138204	1802 bp upstream
Tssr138205	transcription start site region 138205	1840 bp upstream