rs50834817 SNP Detail

Summary

• ID
  rs50834817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAACAAC AACAAGACTC TTATTCCTCA GCTGGCTAGG
  GATTTAGCTC AGTCGAGCAC TCGCCTACCA TTTATGAAGC CATTTGAGCA CGGTGGTTCA
  Y
  GCCTACAATC CCCACGCTAC AGTCAGACAG TCAGACTCAC TGTTATTCTT GGGGAGCTCA
  AGGGCAGCCA GTTTCAGACC CTGTTTGGGG GAGGCCAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514257	ENSMUSSNP6760838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50834817					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1747 bp proximal
Gm75308	predicted gene, 75308			1673 bp upstream
Rr564422	regulatory region 564422			1309 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1990 bp downstream
Tssr26084	transcription start site region 26084			881 bp downstream
Tssr26085	transcription start site region 26085			1973 bp downstream