rs50835010 SNP Detail

Summary

• ID
  rs50835010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:65207453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATTAA CAATACATTC
  CACCCCACTG TGTACCAGAG AATGCCAAGG TCCTAAGTGG CTGACCTCAG GTGGTTCTGA
  CTAAGGGCAT GAACAAACAA TTAACGAGTT TGAACCTACC TTTTAAAATT AGAAATATTA
  AGACCTAATT GCAGATTCAA CAAAAATTTA TATCCCTTTG ACATTTTTTC AGTAGGGCCT
  Y
  ATTATGTAGT CTAGATTGGC CTCTAGAATA CTCCTGAATA CTGGGATTAT AGGAATAAAT
  CACCATGCCC AGCTTTTGAA ATAATGGTCA GGCCTTTAAA GAAAGGAAAG TTTGTTGAGA
  AATGAAAGTT TTTCAACTAG ATAAATAAAG ACTAGCAGTA CTATTTGTAT TTTACTCTGA
  TTTATAGTTT AAGTCTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52441737	NES15414782	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50835010					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441737	NES15414782	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65207453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mis18bp1	MIS18 binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr116466	transcription start site region 116466			1474 bp upstream