rs50835341 SNP Detail

Summary

• ID
  rs50835341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40712806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG GCGGCGCCGC CATGGCCTTG
  W
  GGCTCCGCGT GGCGGGGGAG GGGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136338422	ENSMUSSNP5159052	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322919704	CHEV_9_40609593	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50835341					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40712806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1354 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	465 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	within coordinates
Tssr84480	transcription start site region 84480	1404 bp downstream
Tssr84481	transcription start site region 84481	226 bp downstream
Tssr84482	transcription start site region 84482	395 bp upstream
Tssr84483	transcription start site region 84483	856 bp upstream
Tssr84484	transcription start site region 84484	1115 bp upstream
Tssr88972	transcription start site region 88972	724 bp upstream