rs50836046 SNP Detail

Summary

• ID
  rs50836046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36392838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCCCAGA GTCCTTGTCC TTCAAGATGA TCCTTCCACG
  GACTCAGCAT GTACCCCCGT CTGAGGTCAG ACTTTAGGCT GAGAGACACC AGCCAGCCCT
  R
  GCTCCAGGTC CTGGAATGAT GGCATTCAGG ATTTTTTTCT TCTAGGTGGG CACTCAACTA
  AGAGACACTC CAGCCTTCCT AGGACCAGAA GGGCTGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148848823	ENSMUSSNP6629738	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss322166697	CHEV_7_37478432	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50836046					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36392838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	885 bp proximal
Cpgi18884	CpG island 18884	1764 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Rr645552	regulatory region 645552	561 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	777 bp proximal