rs50836570 SNP Detail

Summary

• ID
  rs50836570
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGCCTTGGAG ACCCTCAAAG TCCTGGACAG CTGCAATCAG
  CACTGGCTCT TAGCGTCACC CAGAGGACTG CCGTAAGTGG CCCTGATGCG AGTGAACTGC
  T
  TCATCGGTGT CACACCTGCC ACAGCAAGGC AAATCACTTT TCATTTGTAG AAAAACTGTT
  GTAAAAGAAT GGGTATCCAA CTCTCCTCTC CCTCTGAAAT A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144898918	ENSMUSSNP2873318	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50836570					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mroh2a	maestro heat-like repeat family member 2A			mRNA-UTR
				Noncoding-Transcript-Variant
Rr414938	regulatory region 414938			1508 bp distal
Rr414939	regulatory region 414939			961 bp distal
Rr414940	regulatory region 414940			30 bp distal
Tssr7958	transcription start site region 7958			926 bp downstream
Tssr7959	transcription start site region 7959			906 bp downstream
Tssr7960	transcription start site region 7960			883 bp downstream
Tssr7961	transcription start site region 7961			854 bp downstream
Tssr7962	transcription start site region 7962			694 bp downstream
Tssr7963	transcription start site region 7963			664 bp downstream
Tssr7964	transcription start site region 7964			637 bp downstream
Tssr7965	transcription start site region 7965			613 bp downstream