rs50838331 SNP Detail

Summary

• ID
  rs50838331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCAGT CTTCATAGTC
  TTAAGGATAT GTTTCACTGA ATCATCACTC AGAGAGTGCA CTAGTGATCA AAGTATTGCA
  TTGTGATGAT TCGTCTTGGT GTCAGCTGGG CCTCACTTAA GCGTCACCTA GGAGACACAC
  CTCTGAGTGT CCTATAGAAG TCTAAAGGAG TCCCTTCTTG CTGACTCACT GAATACATGC
  R
  TCTCTCCGTG GTGCTTCCAG CAGGGGTTGA AGTGGGGGAA GTGCCCGGGA GAAGATGGCA
  TTCAGCAGAA TTGGACGGCC ACCATTGCCA ATCAGCAGAG CTTCATGACC ACCACTGAGT
  CTTCTAAAAT ATTCAGTTCA GATCCGGTGC TGGAAACCTG CCCTTCTGTG TGAACTACTG
  CTGCAAAGGT GACTATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328632	NES15372060	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50838331					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328632	NES15372060	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492085 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	973 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	660 bp downstream
Tssr112998	transcription start site region 112998	1655 bp upstream
Tssr112999	transcription start site region 112999	1702 bp upstream
Tssr113000	transcription start site region 113000	1826 bp upstream
Tssr115902	transcription start site region 115902	771 bp downstream
Tssr115903	transcription start site region 115903	1103 bp downstream
Tssr115904	transcription start site region 115904	1120 bp downstream
Tssr115905	transcription start site region 115905	1425 bp downstream
Tssr115906	transcription start site region 115906	1553 bp downstream
Tssr115907	transcription start site region 115907	1608 bp downstream
Tssr115908	transcription start site region 115908	1648 bp downstream
Tssr115909	transcription start site region 115909	1734 bp downstream
Tssr115910	transcription start site region 115910	1786 bp downstream
Tssr115911	transcription start site region 115911	1836 bp downstream
Tssr115912	transcription start site region 115912	1850 bp downstream
Tssr115913	transcription start site region 115913	1885 bp downstream
Tssr115914	transcription start site region 115914	1937 bp downstream
Tssr115915	transcription start site region 115915	1966 bp downstream