rs50838353 SNP Detail

Summary

• ID
  rs50838353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165951146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCTTCTT CTTTTTTATT TTTTTCTAAC ATGCTTATTT
  TATACTCCAA CTTGTCTGAT ATTGATAGGT TCCACTGGCC TCTTTTCTGT TTGTGTCTAC
  R
  CTTGTGGCAG CTTCTGTTTA TCTTCCAGAG ATGACTATAA TATTTCCTAT CCTAATTTTT
  CTCTCTATAA TGCAACTTTA AAACTCTTTT GATTGAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146013063	ENSMUSSNP3025685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50838353					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165951146 () rs orientation: forward

Symbol	Name	Function Class
Rr372394	regulatory region 372394	525 bp upstream
Rr422532	regulatory region 422532	329 bp distal
Rr422533	regulatory region 422533	1521 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	Intron
Tssr9857	transcription start site region 9857	1977 bp upstream