rs50838740 SNP Detail

Summary

• ID
  rs50838740
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCCTT GGAACCCCCT
  GTCTCTGCCT CCACTGCACA GGGTTACAGC TGCACACTAC CTCGCCTGGC TTTTGTTTGT
  TATGTTTGTT GTATCGGTGT TTTGCTTGCA TGAGTGTCTG TGCACTGTGC CCATGGAGGC
  CCAGAGAGGA CATCAGAGCC GCTAAAACTG GAGTTACAGA CAGTTGTGAG CTCCACATAG
  G
  TGGTGGGAAG GGAACCTGTA TCTTCTGTAT GAGCAACACG TGCTCTTAAT TGTAGAACTC
  TCTCTCCAAC CCTCGATTTT TGTTTTGTTT CGTTTCATTT TGTATTGTAT TGTACTATGT
  AGGTGCTGGA AATGCAAACT CAGGTCTTCA TGTTGGCATA GTGAGCACTT AGCCAATGGC
  GGCATCTTCC CAGCCCACAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148206286	ENSMUSSNP3098254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50838740					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436675 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	285 bp downstream
Rr569427	regulatory region 569427	399 bp distal
Rr569428	regulatory region 569428	275 bp proximal