rs50839347 SNP Detail

Summary

• ID
  rs50839347
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:115714801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTACTCA TTAAATATTA
  AAATACGTTC ATATTCACAA AGTGGAGTTT ATATTTGCAT GCTTGCTCTT ATTACCGTTT
  GGATAGGTCA AAGAAACTGA ACCCCTCAAC CCTTCCTTAC CTTGCATCAA TCCGGCACAC
  CTGTTAGCGT CCATCTGCGA GCACTCTTCC TTCTCAGGAC CTCTGAGAGA AGCTGTGTAA
  S
  GTAGAAATTT TCGTTAGCTC TCCACCAGCT GCCAAAATTT GGCTGCGGTC CTGCAGTGCA
  GAGGTGTCGA TGCGTCAGGT TGACAGACGG TAAATGCTTC TCCAGAGGGA CAGCAGGAGC
  CTCTAGACCT CACATAAGCT GAGCGCATTC ATAGCACAGA GCCAGGTTAG TTCCGCACGT
  GGCTAAGGCC AGCGCCTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62571787	NES17297666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50839347					SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62571787	NES17297666	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:115714801 () rs orientation: forward

Symbol	Name	Function Class
Gpc5	glypican 5	within coordinates
Rr286822	regulatory region 286822	1601 bp distal
Rr294219	regulatory region 294219	1653 bp distal
Rr297879	regulatory region 297879	within coordinates
Tssr130199	transcription start site region 130199	88 bp downstream
Tssr130200	transcription start site region 130200	151 bp downstream
Tssr130201	transcription start site region 130201	196 bp downstream
Tssr130202	transcription start site region 130202	222 bp downstream
Tssr130203	transcription start site region 130203	251 bp downstream