rs50839554 SNP Detail

Summary

• ID
  rs50839554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126767462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGTCACTGAG TTGGTTGGGT CCTGAGTGTG CAAACCCAGT
  AGATTCATCT CCATGGTGGA TTCATAATTT GATAATATTT TTGGTGGGGG CTGGGTGGAG
  R
  AGGCCACCAG GGACATCTTA TTAGGGGTTG CATCTTGTCC CTGGTCTCTT CCCCATCCCT
  CCTGTGGCTT GCACCCCAGC TAGCAACTTT GCTATGATGC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss133625934	ENSMUSSNP5644130	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50839554					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126767462 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	1950 bp downstream
Gm67331	predicted gene, 67331	398 bp downstream
Rr638910	regulatory region 638910	1519 bp proximal
Rr638911	regulatory region 638911	1589 bp proximal