rs50839968 SNP Detail

Summary

• ID
  rs50839968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121427405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGAGTC CTGGCTCTCT
  GTCTCTCTGT CTCTCTGTCT CTCTTTCTCT CTCTGTCTCT CTCTCTGTGT CTGTCTGTCT
  CTCTCTCTCT GCTACTTTGT GTGAGGGTTT CACAATGGGA AAAGCCTCCT ACACTTCAAG
  ATGAATCAGG ACTCAGAGGA AATGAGTAAG AACTCATGAC CAGGGCCTGG GCTCAGTGAT
  R
  TGGACGGAGT CCTCCACTTA TTGCAGACAC TAACTGCAGC CAACAGATTA TTAGCAAAAA
  ATGAAGGATC TCAAGTGCCA GGGTTATTTA TAAAGAAACA GCTTCTGTGG CTTTGATAAA
  TTTATCATGA AATGTCGTGC TGAAACCCAG TCCAGCCAGA GCTCAGTACA GCTGTGATCA
  CAACTGGAGA CATGCTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61239938	NES16854038	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50839968					SNP	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239938	NES16854038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121427405 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	635 bp upstream
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr207963	regulatory region 207963	1197 bp proximal
Tssr87791	transcription start site region 87791	1460 bp upstream
Tssr92055	transcription start site region 92055	1124 bp upstream