rs50840510 SNP Detail

Summary

• ID
  rs50840510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCCAGAAG ATGTAGCTTG TTGAAGGATA GCTGGGCGTG
  AATGTCCCTG TAGCTGGTCG GAGTTTCCTT CCCATCTCAG CCTCACCAGT CCAGCTTCAG
  R
  TCAGCTTTAC TCCACACATA CTTTCCGCCA CGCTTCAGAA ACATCTTCTC ATCAAATCCA
  CTGAACTTTA TTGCTTCTTC CACGCCAACA TCCAGAATAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328566	NES15372023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50840510					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328566	NES15372023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495423 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	1035 bp distal
Rr464137	regulatory region 464137	951 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	1671 bp downstream
Tssr112999	transcription start site region 112999	1606 bp downstream
Tssr113000	transcription start site region 113000	1505 bp downstream
Tssr113001	transcription start site region 113001	1018 bp downstream
Tssr113002	transcription start site region 113002	994 bp downstream
Tssr113003	transcription start site region 113003	906 bp downstream
Tssr113004	transcription start site region 113004	855 bp downstream
Tssr113005	transcription start site region 113005	846 bp downstream
Tssr113006	transcription start site region 113006	479 bp downstream
Tssr113007	transcription start site region 113007	389 bp downstream
Tssr113008	transcription start site region 113008	221 bp downstream
Tssr113009	transcription start site region 113009	206 bp downstream
Tssr113010	transcription start site region 113010	16 bp downstream
Tssr115905	transcription start site region 115905	1902 bp upstream
Tssr115906	transcription start site region 115906	1782 bp upstream
Tssr115907	transcription start site region 115907	1723 bp upstream
Tssr115908	transcription start site region 115908	1679 bp upstream
Tssr115909	transcription start site region 115909	1595 bp upstream
Tssr115910	transcription start site region 115910	1541 bp upstream
Tssr115911	transcription start site region 115911	1493 bp upstream
Tssr115912	transcription start site region 115912	1479 bp upstream
Tssr115913	transcription start site region 115913	1444 bp upstream
Tssr115914	transcription start site region 115914	1396 bp upstream
Tssr115915	transcription start site region 115915	1353 bp upstream
Tssr115916	transcription start site region 115916	1312 bp upstream
Tssr115917	transcription start site region 115917	1262 bp upstream
Tssr115918	transcription start site region 115918	1247 bp upstream
Tssr115919	transcription start site region 115919	1216 bp upstream
Tssr115920	transcription start site region 115920	1184 bp upstream
Tssr115921	transcription start site region 115921	808 bp upstream
Tssr115922	transcription start site region 115922	783 bp upstream
Tssr115923	transcription start site region 115923	690 bp upstream
Tssr115924	transcription start site region 115924	630 bp upstream
Tssr115925	transcription start site region 115925	615 bp upstream
Tssr115926	transcription start site region 115926	264 bp upstream
Tssr115927	transcription start site region 115927	223 bp upstream
Tssr115928	transcription start site region 115928	1748 bp downstream
Tssr115929	transcription start site region 115929	1778 bp downstream