rs50840881 SNP Detail

Summary

• ID
  rs50840881
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81491827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGTCAC TTAAGCAAGC
  CACCTGGTGA GGTTAGCTAG CCTTGCATTT CATAAATATG TAAAACTGAA ACCCAAACTC
  CCTGTAGCTC AACCCACTCT AAGCAGAGAA TGCACCACCT CCCAGAAGCC ATTGCAAGAT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTTG GATATATATC CTTAAGCACA CAACTGGATA
  K
  GGAAAGGAGA AAGATCTTTT CTTTGAGGAT AAATTGTAAA CAGTAACAGG TTGGCGAATG
  CTGGAAACCT GGGCTATAGC AGGAAAGTCT AGGAAGGCTG CTATGAACTA ACTCCTAACC
  TGCTGCCCAG TCAGGACCTG GCATACTAAG CCTGATAAAG AGCAGCGAGG GAAAGCAGCT
  TGACTCTACT CCTAGAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147604578	ENSMUSSNP2673883	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50840881					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81491827 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	within coordinates
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	within coordinates
Gm30288	predicted gene, 30288	within coordinates