rs50841129 SNP Detail

Summary

• ID
  rs50841129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT TTATTTATTC AGTATGGATA
  Y
  GTGTATGTAT ATGTGCATGT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132549959	ENSMUSSNP538154	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323783788	CHEV_11_88874056	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50841129					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903568 () rs orientation: forward

Symbol	Name	Function Class
Rr454280	regulatory region 454280	160 bp distal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1833 bp downstream
Tssr104067	transcription start site region 104067	1765 bp downstream