rs50841493 SNP Detail

Summary

• ID
  rs50841493
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38766559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTGGACC TCCGGAGTGG ATCTCAGTGT TTCCACCTGT
  CCTTTTATAG AATGCCAGTC ATGGAGGGAG TTCTGAGTGC CCATGGACAG CCACCAGAGT
  G
  TTGCCTTCCC AGATATAGCA TGAGAGGGTA CTGGCCAGTG CCACCAGTAC TCTCTGGGCA
  CTGAGTAGGT AAGCCCAAAA CCGGAGCAAA GCTACCAAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146968991	ENSMUSSNP2474950	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325587772	CHEV_18_38793160	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50841493					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38766559 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	1271 bp distal
Gm58701	predicted gene, 58701	within coordinates
Rr393575	regulatory region 393575	within coordinates
Rr393576	regulatory region 393576	1872 bp upstream
Rr536561	regulatory region 536561	638 bp distal
Tssr150807	transcription start site region 150807	1790 bp downstream
Tssr150808	transcription start site region 150808	1044 bp downstream
Tssr153047	transcription start site region 153047	1958 bp upstream
Tssr153048	transcription start site region 153048	1926 bp upstream
Tssr153049	transcription start site region 153049	1887 bp upstream
Tssr153050	transcription start site region 153050	1036 bp downstream