rs50841581 SNP Detail

Summary

• ID
  rs50841581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64643925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG ACATCATAAA ATGAAGAAGA
  Y
  GTCACAGTTA GTACTGCAGA ATCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148570926	ENSMUSSNP4837402	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321560860	CHEV_5_64877821	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50841581					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64643925 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	1276 bp upstream
Rr122953	regulatory region 122953	229 bp distal
Rr131555	regulatory region 131555	567 bp proximal
Rr367844	regulatory region 367844	1233 bp upstream
Tssr46401	transcription start site region 46401	1270 bp upstream