rs50842101 SNP Detail

Summary

• ID
  rs50842101
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113306043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC CAACCCGAAG GCAGTTAACT
  M
  TGGAGAGTGG CAACCACTGA GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145681410	ENSMUSSNP4288153	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322423820	CHEV_7_120850320	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50842101					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113306043 () rs orientation: forward

Symbol	Name	Function Class
Gm5600	predicted gene 5600	within coordinates
Gm71809	predicted gene, 71809	within coordinates
Rr152955	regulatory region 152955	443 bp distal
Rr163207	regulatory region 163207	844 bp proximal