rs50842338 SNP Detail

Summary

• ID
  rs50842338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34861932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAAAT GTTTGCTTGG
  TAGCTTTGAT GATAGGGTCC CCCTGGGCTC CCCAGGCTGG CCTCTTGCTT CAGCCCCTCA
  CACAGCTGAA ATCGCAGGAG TATAGTACTG CACCCAGCTT AAACTCTGTA AAGTCTTTAA
  GTTCTAAAGG ACCCAATCTC GGGTCTTTTT TTGACATAGT GGTACAAACT AGACAGAGTG
  R
  AGAATTCCCC GAGTACATCT GCAGTGCCAG GCATCAGAGC ATGAGAACCC AGAACGGTGG
  AGAACATCAA TTCTCTCTTT GTGATCCCGG GGCTGCCCAG GAGCTCTGAT TTGCTGCAGC
  TGTCCACTGC CCATCATCAC AAATGCCACA TGCCTGAGAC AAGAGCCACA TCGAAAATGT
  GAAGTTTGAC TTCTATTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993878	NES16131324	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50842338					SNP	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993878	NES16131324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34861932 () rs orientation: forward

Symbol	Name	Function Class
Gm38988	predicted gene, 38988	830 bp downstream
Gm73982	predicted gene, 73982	within coordinates