rs50843062 SNP Detail

Summary

• ID
  rs50843062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92088033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTAGCAG AAATAGTTAC ACTTGCCAGA TAGACAGAAA
  TAGCCCCAAA TGTCTGTGAC TGAAGAGCAG GCAAACAAGT ATGTATGTAC ATAGAATGAA
  Y
  GTAAAGTTCT GATATGCCCC ATAATGTGCA TGGATCTTGG AAATGTGTTC AGTAAGAGCT
  ATGTATAGAA GACTACACAT AATTATATCC TACTTATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145570182	ENSMUSSNP1569693	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322791496	CHEV_8_93885304	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50843062					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92088033 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	1968 bp proximal
Rr191071	regulatory region 191071	within coordinates
Rr191072	regulatory region 191072	1969 bp proximal
Tssr78731	transcription start site region 78731	1856 bp upstream