rs50852396 SNP Detail

Summary

• ID
  rs50852396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64831898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTAGAC TCTAACCAAC
  AATGTATAAA AGATCAGTTT TCTCTGTTTT ACCATAAGTA TTGGGTATTA ACAAAATTCT
  ATCTAATTTA TACCATGTAT CATCACTGTG TCCATAAAGT AATTCTGAGA GCTGACATCT
  AGGGATATCT AAGAAGTTAT TGACCATCTC AAGCTGAGAA AACCATAAAA TTCAGTCCAA
  R
  TAAGATATGC TTCTACTGTG CACCTGATTG AAGTCTTGCC TCTGTGACTG GAGCATCCAA
  AAGATCCTGG CTTTGTTGTA CAAGCGAGCC TTTAACTTTT TATTCTATGT AAATATGTTA
  TTGGAGAAAA CAAATATGAA CTTTTATCTA AAAAAATGAA ACTAGATCTA AATATTTACA
  GTGTCTGGGT GTCAAACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635099	NES17583726	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50852396					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635099	NES17583726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64831898 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	1187 bp upstream
Gm59451	predicted gene, 59451	1041 bp downstream