rs50852622 SNP Detail

Summary

• ID
  rs50852622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153778987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGAGTG CTCAGGCCAG
  TTGGGGCTCG GTCATCATTT GTGGTTACAC TGGCAACTGC ACTTATGCTG GGCTCTGAGC
  TGGTCACCCT CCTGATTTTC CTGGAGAATT CACATCTCAG ATGGGTCCAG GGATGTCTGA
  GTGGTCCAGA GGGGGAGTAA AAGGCAGGTA GATGGCAGGA CTGGCATGTG CAAAGGTCCA
  R
  AGGCAGGGGG CGTGACAAGG AGCAGGTGAG AGCATAAGGA GAAGACGGGG TGGGGGTGGA
  GTCTTGGGTG TCAAGGGAAG CCTGGGTAGA AGACTGGGCA ACTGGTGCCT CTATGGGAAT
  AGGGAGTGAT GGGGGAAAGG AAGGTGGGAA CTTTGAGTGA GGGAATGTTC TATAGTGTGG
  TGAGATGCAG GCTACACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148010216	ENSMUSSNP5758145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320566489	CHEV_2_153762803	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50852622					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153778987 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	1150 bp upstream
Rr567755	regulatory region 567755	1618 bp distal
Rr567756	regulatory region 567756	1372 bp distal
Tssr20927	transcription start site region 20927	1151 bp upstream