rs50852700 SNP Detail

Summary

• ID
  rs50852700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32112140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGGGTAT GTCTGAGCCT
  TTGAGAACAC CAAGAAACGA GGATGATCTT CCTCGCTCAT CTCAATAGGC CAGGCCCCAG
  CTTCTTCCCC AGCTACAGGA GCAGCTGTGG CCCTGACCTG GCCCAACTCT ACCAGCAACG
  TTCTCTCCTC AGCCCTCCCA GTCCCCTCTG AGTTTACCCT ACAGTCTATG TGTGCACCAT
  Y
  TCCATGTCCC TGTGAGGACC AAGGCTCTAC TCCACCAGTG ATGCCCTGAC TTATGGGATG
  TGCTCACACA GAAGCCCCAG AGCTCCCAAC AGAGGGAGCA ACCAATCCAT GCCTTCGATT
  ACAAGTACCA GTAGAAACCC AAAGGCCTGA AAGAGGGGGT GAGAGCAAGC GGGGCTACAG
  GTCTGCAGAC TCTACTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60383507	NES15883155	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50852700					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60383507	NES15883155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32112140 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	within coordinates
Rr80380	regulatory region 80380	1662 bp proximal