rs50852708 SNP Detail

Summary

• ID
  rs50852708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75548066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTCTGA ACCGTTTGTC
  CTCCAAAGCA CCTGTAACAC GTAGCTGGGA TTTGAGGTCA CCTGAACTAA CCCACTCCTG
  TTCTCTGAAG AGGAAGCAGT CCTGAGAAAG GAGGAGGTTT GTCCAAGGTC AACACCAGCA
  TTCTTTCTGC CGTTCCTAGG AGCTCCTTGT CATGTCCCAC CTTCCTCAAC TCAAAATGCC
  R
  CTGCCCTGGA TTCCATGCAG TCGTTCAGTG TCTGCTGGGC CCTTTGTGCT CCTATGGGCT
  GTGTGCATGG TCCATATGTC CCATAGGGTC TCTTATCTGC ATTCCAGCAT CCTGCAACCC
  AGCCATATGT CCGGAACATG TTCTGTAGCC TGTGTCCAAA GTGTCCCTGC CTTCTACATC
  CTGCAGGCAG GGTAGGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132438945	ENSMUSSNP51610	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323751163	CHEV_11_75470742	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50852708					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75548066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	653 bp distal
Myo1c	myosin IC	within coordinates
Rr451247	regulatory region 451247	1357 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1465 bp downstream
Tssr103027	transcription start site region 103027	1384 bp downstream
Tssr103028	transcription start site region 103028	1322 bp downstream
Tssr103029	transcription start site region 103029	1303 bp downstream
Tssr103030	transcription start site region 103030	1240 bp downstream
Tssr103031	transcription start site region 103031	1203 bp downstream
Tssr103032	transcription start site region 103032	1063 bp downstream