rs50853914 SNP Detail

Summary

• ID
  rs50853914
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13009453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTACC CACATGGAGA
  AAGGGCAGAA TGTACTCCCT CGAGTTGTTC TCTGACCTCC ACACCTAGAC TGTGACATGC
  TCCTCTTTCC CCACAAAATA AATACATGTT AAAAAAAAGA TTTTAAGTAG AGTGGACCAC
  TTTCCTTTTC TCCACCTCCC ATCTTCACTC TCAACTTGAT TCTCAATACT GTATGTGGCT
  M
  TTTGAAATTT CTTTCTTCCT CTATGTTGCG CTTTCTCCTC CCTTCTTTCC ATTCTTTTAG
  TCATTGTCTC TTAGATTAGA TTCTCAGTGG TTCAAGAGCT GGGATAATCA ACTGTGGTCT
  CAAAACACCC AGCATGCACA CAAGAAGTAC TCAATAAATG GTTGTTAAAT GTTGAATTGT
  GTCCTGGTAG CAAAGGCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970733	NES16158049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50853914					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970733	NES16158049	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13009453 () rs orientation: forward

Symbol	Name	Function Class
Lig1	ligase I, DNA, ATP-dependent	1786 bp upstream
Tssr64537	transcription start site region 64537	1628 bp upstream
Tssr64538	transcription start site region 64538	1727 bp upstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates