rs50854049 SNP Detail

Summary

• ID
  rs50854049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132796753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATACACT CGTTTATTTT TTCTGACCTT AAGGAATTTA
  TGACAAAGGA TTTGGTGGTG AGTATGGCGG GGGATGGAGA TGGGGTGGTG TAATTCCCCA
  R
  TCAAAGTTAG AGAGGTATGT ATTAGGGTAT TCTTTTTTTT TTTTTTTTCT TTTTTAATTT
  AAGCCAAAGC AGTTCTCGTG CAAACTCAAG CTTTCTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135916546	ENSMUSSNP1129951	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50854049					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132796753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			188 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			863 bp upstream
Rr398028	regulatory region 398028			within coordinates
Rr398029	regulatory region 398029			765 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			823 bp proximal
Rr585502	regulatory region 585502			859 bp proximal
Rr585503	regulatory region 585503			1031 bp proximal
Rr585504	regulatory region 585504			1901 bp proximal
Tssr31768	transcription start site region 31768			835 bp upstream
Tssr31769	transcription start site region 31769			852 bp upstream
Tssr31770	transcription start site region 31770			894 bp upstream
Tssr31771	transcription start site region 31771			931 bp upstream
Tssr31772	transcription start site region 31772			1578 bp upstream
Tssr35744	transcription start site region 35744			744 bp downstream
Tssr35745	transcription start site region 35745			772 bp downstream
Tssr35746	transcription start site region 35746			806 bp downstream
Tssr35747	transcription start site region 35747			1037 bp downstream
Tssr35748	transcription start site region 35748			1053 bp downstream
Tssr35749	transcription start site region 35749			1386 bp downstream