rs50854637 SNP Detail

Summary

• ID
  rs50854637
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGGCAC AAATGCAGTG
  CTCTCAATAC ATGGAGCCAA GGGACTCATA TACATGAAGT AAAAATAAAT AAACATCTAA
  AGGTAATAAA AAACTATCGT AGACCACTAT GTCAGCTACT AATGAATGCT GTTGCATAAG
  GATAAGTGCT CGAAGAATTT AGTCAACATT TAAAATATTC TGACTGTGGT AACCTGGGCA
  W
  GTTCAGAGAA AAGCTCATCT GTGATGTTAC TGGTCAGGGA ACTGAAACTA GATAACTATT
  TAATTTGTCC CTTGATTCAG GACAACCAGC TTTGCTAAAG AGCTAGCCTC TTTTTCTTCT
  GTTAGTTGAA GTATTACACT CCTCTGAAAA AGGAATGTAT ACCACTAATT ACTTGATATC
  TCCTCATAAC CACGAAAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609638	NES17307811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50854637					SNP	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609638	NES17307811	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307297 () rs orientation: forward

Symbol	Name	Function Class
Rr498565	regulatory region 498565	204 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1442 bp upstream
Tssr130395	transcription start site region 130395	620 bp downstream
Tssr130396	transcription start site region 130396	583 bp downstream
Tssr130397	transcription start site region 130397	1306 bp upstream
Tssr130398	transcription start site region 130398	1342 bp upstream
Tssr130399	transcription start site region 130399	1450 bp upstream
Tssr130400	transcription start site region 130400	1470 bp upstream
Tssr130401	transcription start site region 130401	1484 bp upstream
Tssr130402	transcription start site region 130402	1552 bp upstream
Tssr130403	transcription start site region 130403	1584 bp upstream
Tssr130404	transcription start site region 130404	1624 bp upstream
Tssr130405	transcription start site region 130405	1644 bp upstream
Tssr130406	transcription start site region 130406	1675 bp upstream
Tssr130407	transcription start site region 130407	1709 bp upstream
Tssr130408	transcription start site region 130408	1745 bp upstream
Tssr130409	transcription start site region 130409	1754 bp upstream
Tssr130410	transcription start site region 130410	1775 bp upstream
Tssr130411	transcription start site region 130411	1831 bp upstream
Tssr130412	transcription start site region 130412	1906 bp upstream
Tssr133563	transcription start site region 133563	1374 bp downstream
Tssr133564	transcription start site region 133564	1446 bp downstream
Tssr133565	transcription start site region 133565	1494 bp downstream
Tssr133566	transcription start site region 133566	1500 bp downstream
Tssr133567	transcription start site region 133567	1747 bp downstream
Tssr133568	transcription start site region 133568	1818 bp downstream