rs50858323 SNP Detail

Summary

• ID
  rs50858323
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101214099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGACTCTCA GTGTCTATTT GACTTTTATT CCTCTCCGTC
  TTCCAATCCC AAATCATATT TCCACCTGGG ATGCATCACT TTCACTCCCA GCATTCTGTA
  G
  GAAAGGAGGC GGGATGCGGG ATGCTCTCTT CCCAAGAATA GTGCTCAGTA ACAAACCAAT
  CGCATTTTCG TTGGGCAGTG CACCTATCCA CCCTCAGATC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132726865	ENSMUSSNP7133777	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs50858323					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101214099 () rs orientation: forward

Symbol	Name	Function Class
Aoc2	amine oxidase copper containing 2	1790 bp upstream
Psme3	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	within coordinates
Rr456946	regulatory region 456946	254 bp proximal
Tssr105079	transcription start site region 105079	1357 bp downstream
Tssr105080	transcription start site region 105080	1178 bp downstream
Tssr105081	transcription start site region 105081	1084 bp downstream
Tssr105082	transcription start site region 105082	682 bp downstream
Tssr105083	transcription start site region 105083	376 bp downstream
Tssr105084	transcription start site region 105084	209 bp downstream