rs50858411 SNP Detail

Summary

• ID
  rs50858411
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15217220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA AAAAAAAAAA AAAAAAGTAG
  A
  AGGCAAGTGA GGACACAGGG ACAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136206790	ENSMUSSNP888566	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322867489	CHEV_9_15110368	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50858411					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15217220 () rs orientation: forward

Symbol	Name	Function Class
4931406C07Rik	RIKEN cDNA 4931406C07 gene	within coordinates
Cpgi21368	CpG island 21368	within coordinates
Rr205988	regulatory region 205988	within coordinates
Rr401250	regulatory region 401250	56 bp upstream
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	290 bp upstream
Tssr83860	transcription start site region 83860	288 bp upstream
Tssr83861	transcription start site region 83861	297 bp upstream
Tssr83862	transcription start site region 83862	328 bp upstream
Tssr88240	transcription start site region 88240	171 bp downstream
Tssr88241	transcription start site region 88241	192 bp downstream