rs50858928 SNP Detail

Summary

• ID
  rs50858928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCCAGGT TGTCTCCCTC ATCATTCACT CTTCCACATG
  GCTATCAACC TCCTCCATTC ACGGTCCATA GGGTCGTCTC TCCTCACTGC CCTCAAAATT
  K
  TCACCCTCTA CCACTCATTG CCCCTGAAGG TTGTCACCCT CTTACACTCT CAGCCCCCCT
  CGGGGTCGCC TCCCTCCCTT GCCGGGGTCT TGAGCCTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132140132	ENSMUSSNP5031775	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50858928					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	67 bp proximal
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	367 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	1712 bp distal
Rr447403	regulatory region 447403	896 bp distal
Rr447404	regulatory region 447404	within coordinates
Rr447405	regulatory region 447405	179 bp proximal
Rr447406	regulatory region 447406	378 bp proximal
Rr447407	regulatory region 447407	482 bp proximal
Rr447408	regulatory region 447408	684 bp proximal
Tssr3501	transcription start site region 3501	347 bp upstream
Tssr101539	transcription start site region 101539	370 bp upstream
Tssr101540	transcription start site region 101540	595 bp upstream
Tssr108005	transcription start site region 108005	144 bp downstream