rs50859098 SNP Detail

Summary

• ID
  rs50859098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTGAGAGGA AATTCACTAA CTAATAATAC TAGTTAAGAG
  GTGAAATCCC CAAATGGGCA AAATAACCAT ATTATTACCA GTTAAATATC TTATGAAAAC
  W
  TTTTTTTATA TCACAGTGTT ATGATGTTGT CTCCAAGGGA GTAATATGTA AGCTTGACTA
  ATAGAGAGTA GGGAGATATA TATATTTTTT TCTGGTCTGT A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132592493	ENSMUSSNP1473589	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50859098					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694532 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	986 bp upstream
Rr237710	regulatory region 237710	1069 bp proximal
Rr253892	regulatory region 253892	508 bp distal
Tssr104130	transcription start site region 104130	976 bp upstream