rs50861096 SNP Detail

Summary

• ID
  rs50861096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATAGACTT AGGATTTACT AGTATTTATG
  TAGACACAAC GTATCCATTA CAACCAATAA CCACTTCTTT TCCTCATGGT AAGGACAGCA
  GAGGCCCTAA ATAAATACCT AGTCACTGAC TAAATGAATG ACTGTACCAT AGATAGTTCC
  R
  TAGCTTAACA CTCTAAGATA ACTAACAACG TAATCCATAC ATATTGTCAA AGGGTGTGAG
  AACTCCCATT TCTAAGTGTG ATAGTGACCA GTGTAGGCTG ACCAGGAGAG ATGTGGCTGG
  CTTTGTACAG AACATGGAGT CTGAACTAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822400	NES16493735	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		A	A	A		G
ss320071244	CHEV_1_155034310	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50861096					SNP	G	G	G	G	A	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822400	NES16493735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	713 bp distal
Lamc2	laminin, gamma 2	733 bp upstream
Rr13130	regulatory region 13130	75 bp proximal
Rr25076	regulatory region 25076	1066 bp proximal
Rr28719	regulatory region 28719	525 bp distal
Tssr14250	transcription start site region 14250	1124 bp upstream
Tssr14251	transcription start site region 14251	1088 bp upstream
Tssr14252	transcription start site region 14252	1058 bp upstream
Tssr14253	transcription start site region 14253	1044 bp upstream
Tssr14254	transcription start site region 14254	1025 bp upstream