rs50861367 SNP Detail

Summary

• ID
  rs50861367
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145413039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTAGAA AGAATTAGTC TGTGTTTCTT TTCATGAACA
  GCAAGTGCCC TTTACCCCTG AGTCATCTCT CTAGCCCAGA GGTTTACATT TCTGCTACAG
  T
  TTTTTTTTTA AGATTTATTT ATTCATTATA TGTTCGTACA CTTTAGCTGT CTTCAGACAC
  TCCAGAAGAG GGAGTCAGAT CTCGTTACGG ATGGTTGTG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147872987	ENSMUSSNP3826891	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50861367					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145413039 () rs orientation: forward

Symbol	Name	Function Class
Rr97129	regulatory region 97129	54 bp distal
Rr398690	regulatory region 398690	1778 bp downstream
Rr398691	regulatory region 398691	998 bp downstream
Rr398692	regulatory region 398692	154 bp upstream
Rr398693	regulatory region 398693	507 bp upstream
Rr398694	regulatory region 398694	1319 bp upstream
Zfp980	zinc finger protein 980	within coordinates