rs50861631 SNP Detail

Summary

• ID
  rs50861631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25947724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGGCA CTGTGCGTAG
  CCCTGAATAA GGCAGCTGCG GGCAGTGCTT ATAAATGCTT CAAGGAACGG CGAGTCACCA
  AAGCCTACCT GGCACTGGTA AGTCCTGGCC AGTTCCTGGG ATGCTGTGTG GAGACCCAAG
  GCTCACAGCC TACTCCAGCA GGCCTCTCAA CTGAAGCTCC GTGCCAGGCT TATGTGCCTA
  Y
  CTAGAGCTCA GCCACATTCC TCTCAGAGAT GACAGTGTGG CCCAGTGAGC TGCATGTGAT
  GTCCTTGCTC GACAGGTCCG AGGCCATGTC CAGGAAAGCC AAGTGACGAT CAACTATGCC
  ATTGGCAGGA ATAGCACGGA GGGGCGGACG CATACCATGT GCATCGAGGG CACTCATGGT
  AATAGTGGTT TGTTGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255830	NES15704478	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50861631					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255830	NES15704478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25947724 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	1315 bp upstream
Cpgi8774	CpG island 8774	915 bp distal
Rpusd1	RNA pseudouridylate synthase domain containing 1	within coordinates
Rr339369	regulatory region 339369	within coordinates
Rr405102	regulatory region 405102	947 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	953 bp downstream
Tssr146846	transcription start site region 146846	1387 bp upstream
Tssr146847	transcription start site region 146847	1324 bp upstream