rs50862046 SNP Detail

Summary

• ID
  rs50862046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCATCA TCCAGCCCGG
  ATTTGTTTGT AGCTGAAACG CACTGTTGTT TGCCTCCAGA CGATGTAAAC TCCAAGAGCA
  GCAATGCCAT TTGTTCCTGA CCAAGTATGG AGAACCTGGA GATGAGATAG GGAAGGAGTG
  GGGACAGTCA ACCATAAAAT GCCATCTGTT TCTGATGGAG TACAGGGGGA TAAAAGAGAG
  R
  AAGAGCAAGA ATATTCAGGC ATTCACTGGC TTTAGGTGTT GGGCAAACAT CAGTCACATT
  GAAGATGTAG GAGGACTGGT CACCTCTGTC GCCTGCAACC TACTCCAGGA GATATCTGGT
  TTCCCCGCTG ACTGTCCTGC AGAAGGTGAC ATGGAACAAT TCATCAGGAT GGAGCGTTCA
  GGCAGACTGG CTGGTGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132717826	ENSMUSSNP2126274	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323830631	CHEV_11_99914543	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50862046					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944055 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1114 bp downstream
Tssr104895	transcription start site region 104895	964 bp downstream
Tssr104896	transcription start site region 104896	937 bp downstream