rs50862389 SNP Detail

Summary

• ID
  rs50862389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGACTGA GACTTTATCA TTATTTATTT ATTGCCTCAC
  TCTGGCTCAG TCTAGCCTGA AGCTCATTAT GTATGTGACC CAAGCTGTCT CTGAACTCCC
  R
  GAAGGCCTCC TGCCTCAGCC TCCCCAGTGT GTGATTAACA CAACAACCTG TTGGGTATAT
  GCTTTTCTTA ACTTATTGGG GGGTGGGGCA CACCTGTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682507	ENSMUSSNP6214931	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322135273	CHEV_7_31345409	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50862389					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259815 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	552 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1475 bp downstream
Rr400243	regulatory region 400243	494 bp downstream
Tssr71791	transcription start site region 71791	1643 bp upstream
Tssr71792	transcription start site region 71792	1605 bp upstream
Tssr71793	transcription start site region 71793	859 bp upstream
Tssr71794	transcription start site region 71794	738 bp upstream
Tssr71795	transcription start site region 71795	548 bp upstream