rs50865558 SNP Detail

Summary

• ID
  rs50865558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTGGACT TAACACTTTG TATGTTCTGT TTGGTTTGGT
  TTGTTTTCTT GAGACAAGAT TTCTCTCTGT AGGCTGTCCT GGAACTCTCT GTAGACCAAA
  Y
  CGGCTCCAAA CTCAAGAGAT CCACAGACCT CAGCTTCCTG AGTGCCCAAA AAATGTGGGT
  TTATCAAGAG TAGATGTATT ACTGTGCTAA ATATTGATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147514312	ENSMUSSNP1030304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50865558					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1256 bp proximal
Gm75308	predicted gene, 75308			1182 bp upstream
Rr564422	regulatory region 564422			818 bp proximal
Rr564423	regulatory region 564423			1544 bp proximal
Rr564424	regulatory region 564424			1577 bp proximal
Rr564425	regulatory region 564425			1714 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			390 bp downstream
Tssr26085	transcription start site region 26085			1482 bp downstream
Tssr26086	transcription start site region 26086			1611 bp downstream
Tssr26087	transcription start site region 26087			1642 bp downstream
Tssr26088	transcription start site region 26088			1704 bp downstream
Tssr26089	transcription start site region 26089			1718 bp downstream