rs50866318 SNP Detail

Summary

• ID
  rs50866318
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32520649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTATGT CAAGTTGGCA
  AAAGCACAAG GGAATACTCA CTCATACTGT AATTTCCCTT ACAGTCTTGA GTAATACTAT
  TCTACAGGCG CTGCCTTTTC ATATGCATTG TCTTCAGCTC CTCAAAGATC TTAGTAGGGA
  CAGGATATAT ATTACATAGC TTGTACCAGA GCAGCCTCAA AAGGCCTGCA CACTACAGAT
  A
  AACATTAAAA ATGCATTCTG TTCGTAGTGA AAGTCAGTCA ACATTTTTCA AGGCCCACTA
  CCTAAAGCCG TGTGGGAGGA ACTAGGATGA AAATGAGAAA ATCTTTTCTT AAAGCTGTTG
  ACAAACCTGG TCAACTCAAG CAAGCAAGGA AAAAAATACA GAGGAGTGTC AAGGAGGTGA
  TGTGTCAGGG AAGTGATGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148847901	ENSMUSSNP1223498	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324311968	CHEV_13_32428535	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50866318					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32520649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5422	CpG island 5422	1282 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Tssr121995	transcription start site region 121995	1834 bp downstream
Tssr121996	transcription start site region 121996	1888 bp downstream
Tssr121997	transcription start site region 121997	1899 bp downstream