rs50867057 SNP Detail

Summary

• ID
  rs50867057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT GGTCTGTAGT CACATGACAT
  R
  TCCAAATCAC ATCAAGAGGC TGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708971	ENSMUSSNP3287802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325406545	CHEV_17_47866422	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50867057					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040398 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1236 bp proximal
Tssr5147	transcription start site region 5147	722 bp downstream
Tssr5148	transcription start site region 5148	160 bp upstream
Tssr145004	transcription start site region 145004	731 bp downstream
Tssr145005	transcription start site region 145005	710 bp downstream
Tssr145006	transcription start site region 145006	681 bp downstream
Tssr145007	transcription start site region 145007	649 bp downstream
Tssr145008	transcription start site region 145008	628 bp downstream
Tssr145009	transcription start site region 145009	600 bp downstream
Tssr145010	transcription start site region 145010	218 bp downstream
Tssr145011	transcription start site region 145011	199 bp downstream
Tssr145012	transcription start site region 145012	182 bp downstream
Tssr145013	transcription start site region 145013	130 bp downstream
Tssr145014	transcription start site region 145014	607 bp upstream
Tssr145015	transcription start site region 145015	669 bp upstream
Tssr145016	transcription start site region 145016	680 bp upstream
Tssr145017	transcription start site region 145017	1125 bp upstream
Tssr145018	transcription start site region 145018	1137 bp upstream
Tssr145019	transcription start site region 145019	1168 bp upstream
Tssr145020	transcription start site region 145020	1189 bp upstream
Tssr145021	transcription start site region 145021	1215 bp upstream
Tssr145022	transcription start site region 145022	1247 bp upstream
Tssr145023	transcription start site region 145023	1274 bp upstream
Tssr145024	transcription start site region 145024	1385 bp upstream
Tssr145025	transcription start site region 145025	1729 bp upstream
Tssr145026	transcription start site region 145026	1985 bp upstream
Tssr148459	transcription start site region 148459	672 bp upstream
Tssr148460	transcription start site region 148460	620 bp upstream
Tssr148461	transcription start site region 148461	608 bp upstream
Tssr148462	transcription start site region 148462	565 bp upstream
Tssr148463	transcription start site region 148463	192 bp upstream
Tssr148464	transcription start site region 148464	107 bp upstream
Tssr148465	transcription start site region 148465	648 bp downstream
Tssr148466	transcription start site region 148466	661 bp downstream
Tssr148467	transcription start site region 148467	1156 bp downstream
Tssr148468	transcription start site region 148468	1187 bp downstream
Tssr148469	transcription start site region 148469	1277 bp downstream